PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L25DZ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 309aa    MW: 32406.6 Da    PI: 9.8721
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L25DZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-173072347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
      Aradu.L25DZ 30 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 72
                     79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.345122IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-11235IPR009057Homeodomain-like
SuperFamilySSF466891.88E-24277IPR009057Homeodomain-like
PROSITE profilePS5129423.4852377IPR017930Myb domain
SMARTSM007172.9E-142775IPR001005SANT/Myb domain
PfamPF002491.3E-143072IPR001005SANT/Myb domain
CDDcd001671.18E-113073No hitNo description
Gene3DG3DSA:1.10.10.604.9E-203674IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVSKSIPGRS GKSCRLRWCN QLSPQVEHRA FTPEEDDTII RAHARFGNKW ATIARLLSGR  60
TDNAIKNHWN STLKRKCASM GPIDDPHFAQ PLKRSVSAGA AVPVSTGLYM NPPTPGSPSG  120
SDVSESSVPA ASTSHVFRPV PRAGGVVPPV ETTSSSYDPP TSLSLSLPGV DSNSEVSNRG  180
NEPSPHSAPP LTAIPLLPIM SAAVSATVAA VPAVTATAPG AAPLAAQPLQ QIRDPSAVAA  240
VPKQNNGAAP FNFSAELLAV MQDMIRKEVR SYMAGLEQQS NNNGMCFQAA DGGFRNASVK  300
RIGISRIDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2817629104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086740.0KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963920.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW11e-72MYB44_ARATH; Transcription factor MYB44
TrEMBLV5T7X20.0V5T7X2_ARAHY; Putative MYB-related protein 20
STRINGGLYMA01G39740.21e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-64myb domain protein 73